Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs75899185 | chr2:17894355 | C/T | 1.44E-8 | 406 | 15.3 | 15.67 | 7.33 | KM Plot |
| LGG | rs75981738 | chr19:23555470 | C/A | 2.97E-6 | 407 | 15.25 | 15.67 | 7.8 | KM Plot |
| LGG | rs76001702 | chr9:83421337 | T/TA | 1.66E-5 | 396 | 16.23 | 14.73 | 8.5 | KM Plot |
| LGG | rs7601340 | chr2:55653053 | G/C | 3.69E-7 | 398 | 4.6 | 17.65 | 15.17 | KM Plot |
| LGG | rs7602406 | chr2:17574730 | C/T | 6.9E-5 | 400 | 15.18 | 16.6 | 5.23 | KM Plot |
| LGG | rs7607 | chr11:61166306 | G/A | 0.000103 | 406 | 15.63 | 18.7 | 14.47 | KM Plot |
| LGG | rs7608142 | chr2:228092974 | A/G | 0 | 407 | 1.23 | 14.43 | 15.7 | KM Plot |
| LGG | rs76082952 | chr3:153687347 | T/C | 0 | 405 | 15.03 | 17.37 | 0.23 | KM Plot |
| LGG | rs76131466 | chr21:45483951 | C/T | 2.08E-8 | 405 | 15.57 | 13.57 | 3.97 | KM Plot |
| LGG | rs76157988 | chr20:37264880 | C/A | 1.65E-7 | 405 | 15.73 | 14.43 | 6.83 | KM Plot |
| LGG | rs76171341 | chr6:36051200 | T/C | 1.02E-9 | 405 | 15.67 | 15.17 | 6.15 | KM Plot |
| LGG | rs76225344 | chr7:150733115 | G/A | 0.00016 | 405 | 15.33 | 14.37 | 8.97 | KM Plot |
| LGG | rs7623537 | chr3:101237890 | C/T | 2.26E-5 | 402 | 15.37 | 15.23 | 11.7 | KM Plot |
| LGG | rs76264878 | chr6:57034834 | TTGTGG/T | 3.26E-6 | 405 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs76318709 | chr2:17856871 | T/C | 1.44E-8 | 406 | 15.3 | 15.67 | 7.33 | KM Plot |